Confederacy of Independent Systems

"As I explained to you earlier, I am quite convinced that ten thousand more systems will rally to our cause."

- Dooku, to the Separatist Council

The Confederacy of Independent Systems (CIS), also known as the Separatist Alliance, the Separatist State, or simply as the Separatists, was a galactic government that began as a loose separatist movement which stood opposed to the Galactic Republic. In the wake of the Naboo Crisis, various planetary and sectorial governments, as well as some mega-corporations, declared their intentions to leave the Republic during the Secessionist Movement, refusing to comply with its excessive taxation and corruption in the Senate.

Eventually, tensions between it and the Republic led to war after Anakin Skywalker, Obi-Wan Kenobi, and Padmé Amidala were sentenced to execution on Geonosis and a group of Jedi led by Mace Windu attempted to rescue them. After the Republic revealed its clone army on Geonosis, the Separatists were forced to retreat, beginning the devastating Clone Wars.

Background
The origins of the Confederacy can be traced back to the heightening political tensions between the Core and Outer Rim worlds in the Republic that rose as a result of the aftermath of the Invasion of Naboo by the Trade Federation, and exacerbated by years of corrupt and ineffectual governance. The commerce guilds and trading corporations became disillusioned with the Republic after laws were passed to place taxation on all trade routes to poorer outlying star systems who no longer supported the Republic. A long history of heavy taxes and indifference from the Core Worlds, who often forced them into accepting one-sided deals and refused to provide military protection, created an undercurrent of disgust towards Coruscant. This created fears that tensions would gradually increase to the point of a galactic schism as these outlying systems no longer saw any benefit from being part of the Republic. To address the situation, some began to believe that any attempt at change would require radical thinking and extreme actions, leading to discussions of secession from Republic.

Formation of the Confederacy
The poorer systems in the Republic began to rebel and break away after their years of grievances were championed by a charismatic leader called Count Dooku, who was secretly the Sith Lord Darth Tyranus. The former Jedi was able to rally these worlds into a separatist movement that declared independent from the Republic becoming known formally as the Confederacy of Independent Systems which saw the departure of thousands of systems.

Separatist Crisis
This new alliance of Separatists began to seek to create sphere of influence in the galactic south by bringing Yag'Dhul and Sluis Van to their side, Dooku needed to persuade the now prosperous world of Eriadu to join the Separatists. Then-Governor Wilhuff Tarkin refused the offer, despite Dooku's commandeering of a HoloNet station in the Raxus system in which he denounced the Galactic Republic.

Meanwhile on the moon of Antar 4, a schism occurred between pro-Galactic Republic loyalists and those who wished to align with the Separatists. The loyalists were able to retain power until after the Battle of Geonosis, the first conflict of the Clone Wars, before the moon fell to the Separatist Droid Army.

The crisis intensified as more systems pledged loyalty to Count Dooku and the Confederacy of Independent Systems causing a full pedge Secessionist Movement to develop across the galaxy. During this period of uncertainty, a plot to assassinate Senator Padmé Amidala of Naboo was set in motion. Amidala, who was a leading opponent of the Military Creation Act that proposed the creation of an army for the Galactic Republic, was targeted when she arrived on Coruscant for a vote on the measure. The failed attempts were carried out by bounty hunters, Zam Wesell and Jango Fett, who were hired by the Separatists in an attempt to undermine the Republic and to demand any political requests there desired.



Shortly after this, the Jedi Order sent Jedi Knight Obi-Wan Kenobi went on a mission to the aquatic world of Kamino to investigate the identities of those involved in the plot to assassinate Amidala. Obi-Wan attempted to arrest Jango Fett but failed. Instead, the Jedi Knight tracked his ship to the Outer Rim world of Geonosis where he engaged him in a vicious dogfight. Soon after he landed on Geonosis, Obi-Wan Kenobi was captured and held prisoner after discovering the Confederacy was forming an army to undermine the Republic who were secretly backed by corporate titans that offered their unlimited droid armies to the cause, the Separatists emerged as a major threat to the Republic. However before he was imprisoned by Count Dooku, he managed to send a message to the Jedi Council about his discovery. At Amidala's request, Skywalker attempted to rescue Kenobi, only for both of them to be captured themselves and put in the Petranaki arena along with Kenobi.

During the attempted execution of Jedi Obi-Wan Kenobi, Anakin Skywalker, and Senator Padmé Amidala, a team of two hundred Jedi sent to the arena to rescue the trio were attacked by a host of battle droids. Jango Fett died while trying to fight Jedi Master Mace Windu after his jetpack malfunctioned. With the battle turning against the Jedi, Dooku gave the remaining Jedi forces a chance to lay down their arms, a choice to which Jedi Mace Windu declined. In the next few moments, several Acclamator-class assault ships arrived over the arena, while LAAT/i gunships tore through the droid forces surrounding the Jedi. With the aid of the newly-formed Grand Army of the Republic, the surviving Jedi managed to to escape certain death, all while the newly formed clone troopers engaged Separatist forces on the planets surface, starting the deadly three-year Clone Wars.

Clone Wars
"I have good news for you, my Lord. The war has begun.''" "''Excellent. Everything is going as planned."

- Darth Tyranus and Darth Sidious

Beginning of the Clone Wars
"&laquo;The Jedi must not find our designs for the Ultimate Weapon. If they find out what we are planning to build, we're doomed.&raquo;''" "''I will take the designs with me to Coruscant. They will be much safer there&hellip;with my Master."

- Poggle the Lesser and Count Dooku

The arrival of the clones sparked the full-scale battle on Geonosis, with losses on both sides. Poggle ordered his soldiers to retreat and hide, but before he joined them, he turned over plans to the Ultimate Weapon &mdash; a secret project he had been contracted to build by the Separatists &mdash; to Count Dooku. As the battle raged on, Kenobi and Skywalker chased Dooku and tried to prevent his escape by engaging in a lightsaber duel but were defeated by Dooku before being rescued by Grand Master Yoda. Dooku escaped Geonosis and the Separatists retreated, but the goal of the Sith had been fulfilled; the beginning of the Clone Wars. Dooku then went to Coruscant, where he met his master in the Works. He informed Sidious that the War had begun, as he had planned.

Seizing the Hyperlanes
Dooku and his master then recruited the cyborg General Grievous to lead the droid army. At the same time, the Separatists seized control of the major hyperspace lanes following Geonosis, separating the Republic from its army. Ventress, Dooku's apprentice, was sent to assist in helping General Whorm Loathsom during the battle on Christophsis, which at first the Separatist were making gains, but the Republic would end up winning the battle after further reinforcements were dispatched to the planet.

Plot on Teth
On Teth, Republic forces attempted to save Rotta, the infant son of crime lord Jabba the Hutt from the Confederacy, who planned to kill the Huttlet and put the whole blame on the Jedi Order. Their aim was to bring the Hutt Clan onto the side of the Separatists in order to access their hyperlanes. However, Jedi General Anakin Skywalker and his Padawan, Ahsoka Tano, were able to rescue the Huttlet from Teth and return him to Tatooine and in return allied with the Republic.

Occupation of Ryloth
Upon the annihilation of the Republic garrison, Ryloth had been completely occupied by the Separatist Droid Army and Emir Wat Tambor oversaw the occupation from the city of Lessu. He sent his forces to pillage, ravage and rob the Twi'leks' villages and cities of anything valuable.

Destruction of the Malevolence
"Our ship is unstoppabl!"

- General Grievous

The Confedaracy had develop and used the Malevolence, a superweapon to undermine the Republic naval forces which gave them the upper hand against the Republic Navy when Grievous took the opportunity to fire the ion cannons on Nune's fleet, destroying it. Jedi General Plo Koon led a fleet to engage the Malevolence after losing contact with Nune.



After destroying Koon's fleet, the Malevolence was revealed to the Republic after Koon was rescued by Jedi General Skywalker. Dooku ordered the ship to attack the medical center near the Ryndellia system. En route to the Kaliida Shoals Medical Center, the Malevolence destroyed a Republic medical convoy passing through the system where its destruction was finally done by the Jedi Order at the hands of Jedi General Anakin Skywalker after he had tampered with the the ship's navicomputer. Grievous fled on his battle droids stationed on the Malevolence believed that the hyperdrive had been fixed; however, the sabotaged navicomputer caused the Malevolence to crash into a nearby moon.

Battle of Malastare
Malastare was a planet that was a strategic target to the Separatists, as the Republic was also interested in these natural resources. In order to gain the fuel supply-line of the Republic and prevent Malastare from joining the Separatists, they wished to sign a treaty with the Malastare. A T-series tactical droid led the Separatist invasion force, which had almost captured Malastare. In an attempt to turn the flow of the invasion, a Republic superweapon was authorized called the electro-proton bomb in which the ensuing explosion and electromagnetic pulse damaged and deactivated the droid army, along with several Republic vehicles.

Fall of Geonosis
The Galactic Republic launched a second major planetary invasion of Geonosis to shut down the Separatist battle droid foundries that Archduke Poggle the Lesser had built there. After their discovery on Cato Neimoidia, the Republic dispatched a massive detachment of Clones to retake Geonosis and stop the production of battle droids. After establishing a landing zone at Point Rain near the factories, the Republic disabled the factories' ray shield, making way for the rest of the clone troopers to safely land. As Poggle attempted to retake Point Rain, the main droid foundry was targeted by the Jedi, who battled the droid defenses while others sneaked into the facility via the catacombs beneath it to blow up the facility reactor. They managed to collapse the factory from the inside. Despite the Republic's destruction of other key factories, Poggle remained at large, having escaped his key foundry before its eradication and the crushing defeat for the Separatists.

Backing the Death Watch
In order to get support for their attempt at taking over the Mandalorian government, the Death Watch briefly allied themselves with the Confederacy of Independent Systems. As part of this alliance, Death Watch commandos performed sabotage missions for the Separatists against Republic targets. One such mission involved a commando attempting to sabotage a Republic cruiser; the Death Watch commando was captured, but rather than surrender and submit to questioning, he committed suicide. His actions in addition to falsified rumors led to the Republic's belief that Duchess Satine Kryze, leader of the New Mandalorians and head of the Council of Neutral Systems, was training a Mandalorian army for the Separatists. The Jedi Council dispatched Jedi Master Obi-Wan Kenobi to Mandalore to meet with Satine. At first, the Duchess and her advisers discounted any Mandalorian involvement until Kenobi showed holographic recordings of the Death Watch saboteur. She later revealed the existence of rumors of the Death Watch's return. This was later proven when a Mandalorian bombed the memorial shrine in the New Mandalorian capital of Sundari before committing suicide when Kenobi attempted to apprehend him. Left at the bomb site was a holographic representation of the Death Watch symbol, further highlighting the group's return. During these events Pre Vizsla communicated with Count Dooku who revealed his strategy for the Republic to establish peacekeeping forces on Mandalore. Dooku hoped this would cause unrest and lead the Mandalorian populace to the Death Watch's ideals.

When Satine journeyed to Coruscant, Death Watch made a second attempt on her life. Mandalore's senator, Tal Merrik, was secretly in league with the Death Watch and used his senatorial stamp to smuggle several assassin probes aboard the duchess' ship. Once Satine safely arrived at the galactic capital, the Death Watch reoccupied their base on Concordia as a staging area for their impending invasion of Mandalore. A New Mandalorian scout reported to Prime Minster Almec of this development who was confident that Death Watch can't take Mandalore without the populace's support. During a holographic conference with Count Dooku, Pre Vizsla made his move to secure Mandalore's support. A Death Watch assassin was sent to Coruscant, however failed to stop Satine from delivering the evidence to the Galactic Senate thanks to Kenobi's intervention. The Senate revoked its vote to dispatch Republic forces, which compelled Death Watch to cease its planned attack. Dath Watch then broke ties with Count Dooku and the Separatists and vowed to kill the Count.

Kamino Campaign
The Separatists led by General Grievous and Asajj Ventress launched a daring campaign in the hope of capturing Kamino in order to eliminate the cloning facilities in Tipoca City&mdash; which would mean depriving the Republic from creating more clone troopers for their army and turning the tide of the war in the Separatists' favor. However, they were repelled and driven off Kamino by the Jedi and Republic, despite heavy losses.

Blockade of Pantora
During the height of the war, the Trade Federation had set up a blockade above the moon Pantora in the Pantora system in an attempt to make them join the Separatist Alliance. As part of the conspiracy to increase pressure, the daughters of the Pantoran Chairman Papanoida were kidnapped who however was able to rescue both daughters and uncover the conspiracy; forcing the Trade Federation to lift the blockade.

Peace Initiative
"Your Republic forces have carried out a barbaric attack on our people! And among the deaths was the very sponsor of the peace accord, Senator Mina Bonteri. With her needless death, I must formally withdraw the proposal for peace offered by our Senate."

- Count Dooku

A peace initiative was created and approved by the Separatist Congress. The motion for a diplomatic end to the war was presented to the Galactic Senate of the Republic who convened an emergency debate to discuss the true cost of the war. However, in light of a recent Confederate terrorist attack and the assassination of Separatist Senator Mina Bonteri, talks would fall apart after senators like Bail Organa, Padmé Amidala and Mon Mothma opposed these views, with Amidala stating that moral responsibility of the war also had to be considered. This triggered accusations of betrayal leading for talks to be halted.

Loss of Ventress
"Master, I need your help quickly. I am surrounded.''" "You have already lost the battle, child. I've ordered your reinforcements to return." "No! I will destroy the Jedi. I'll show you!" "''You have failed me for the last time. You are no longer my apprentice. And now, you shall die."

- Asajj Ventress is betrayed by Count Dooku during the Battle of Sullust

The fleet began a major space battle against a Republic flotilla, with Ventress personally leading the Separatists against the Republic. However, the state of the battle would change when Dooku was charged by Darth Sidious with killing Ventress to prove his true allegiance to his Master. Dooku ordered an attempt on his apprentice's life. After recalling Ventress's reinforcements, Dooku had her units directly assaulted and destroyed her Separatist command ship. With the Confederate fleet sustaining heavy damage, Dooku ordered the recall of their armada from Sullust.

Seeking the Nexus Route
Sometime later in and around the Citadel, a Separatist prison on Lola Sayu. A group Jedi and clone troopers led a rescue of Jedi Master Even Piell, Captain Wilhuff Tarkin, and their clone forces who were higher important prisoners who had discovered the coordinates of the hyperspace lane known as the Nexus Route, which they believed could prove vital to the Republic's war effort but the Confedaracy saw it as an chance to change the war in their favour and had manage to capture them. Though Piell was killed, Tarkin and his forces were rescued from the custody of the Confederates and brought the vital information back to the Galactic Republic.

Fight for Felucia
A clash with the Galactic Republic for control of the planet Felucia happened due to the Republic being forced into a retreat at the first battle of Felucia, the Republic re-established a presence and an offensive into Separatist-held territory. In retaliation, General Grievous supplied one of his outposts on Felucia with reinforcements to secure the system for the Confederacy. Responding to the arrival of the battle droid detachment, the Jedi targeted the enemy outpost with each leading a squad to divide the Separatist defenses eliminating all of the droid forces there.

Failure on Dac
Seeing an opportunity, the Qurren who were backed by the Confederacy of Independent Systems, attempted to seize the planet Dac from the Mon Calamari people and the Galactic Republic. The Jedi Order intervened in the conflict, bringing reinforcements from the Grand Army of the Republic and the Gungan Grand Army from Naboo. However, the Quarren realized that Tamson and Count Dooku were plotting to take Dac only for themselves so they allied with the Republic and routed the Separatists, resulting in Tamson's death.

Attempted Invasion of Naboo
"Why bring the war to Naboo?''" "How quickly you forget! After all, the war started here years ago." "You were a part of that first battle?" "''The Sith control everything&mdash;you just don't know it!"

- Anakin Skywalker and Count Dooku

Dooku conspired with General Grievous and Rish Loo to launch another invasion of Naboo, a plot that would involve turning the Gungans against the Naboo people. When Minister Rish Loo began influencing Boss Lyonie, the leader of the Gungan community Otoh Gunga call for a alliance with the Separatists and an attack on Theed, Rish Loo went to the assembled Gungan Grand Army and told them that Lyonie was dead, ordering them to attack Naboo immediately. Jar-Jar however showed up at that moment, posing as Lyonie. He denounced Rish Loo, who fled to his laboratory. Anakin followed Rish Loo, fighting the probe droids Rish Loo sent to stop him. Meanwhile, Grievous and his army landed on Naboo who informed Jar-Jar that Grievous wanted to know why the attack on Theed was cancelled. Jar-Jar entered Grievous's lander and negotiated. Grievous figured out that Jar-Jar was not Lyonie, so he chased the gungan outside, where he found his entire army deactivated. As it began to rain, the gungan army surrounded Grievous and told him to surrender. Grievous scoffed at both the very idea and the Gungans resistance before drawing two lightsabers. After several Gungan warriors attacked him, Tarpals attacked him with an electric spear. Grievous, then stabbed him. Tarpals used his final gasp of energy to drive his spear into Grievous's armor. As electricity surged through Grievous, the other gungan warriors threw boombas at Grievous, disabling his cyborg body and knocking him down. He was then taken prisoner. At the same time Count Dooku captures Skywalker. Skywalker who found Dooku's lair, after following Rish Loo to the ancient structure where Dooku had planned to capture Skywalker to force a hostage trade. When Rish Loo approached Dooku and began to speak of their ongoing plans, Dooku denounced Loo as a fool before abruptly stabbing him with his lightsaber. Dooku and Anakin then briefly had a heated discussion regarding the invasion, in which Dooku revealed that the Sith were not only behind the current invasion, but had orchestrated the first invasion as well. Dooku then engaged in a duel with Anakin who quickly found himself overwhelmed by Dooku's attending MagnaGuards who was subdued and captured.

Shortly Padmé Amidala was attempting to contact Anakin from Otoh Gunga, when Dooku appeared on her holoprojector. Inquiring as to what he wanted, Dooku informed Amidala that he had captured Skywalker, while commanding his droids to torture Skywalker through the use of several electric shocks. Dooku then stated that he would be willing to exchange Skywalker for Grievous in a prisoner transfer, and gave her an hour to come to a decision. Though initially hesitant to give up Grievous due to his importance in the war effort Some time thereafter, the prisoner trade did take place and negotiations for the Separatists began, while Neeyutnee and Lyonie, alongside Amidala and Jar Jar, were there to represent the Republic. After Grievous had been released to the custody of the Separatists and Anakin subsequent release was dropped at the feet of the opposing negotiators, along with his lightsaber, the Separatist forces retreated.

Deals with Zygerrian Slave Empire
The Confederacy had formed an alliance with Queen Miraj Scintel and her slaver empire who wanted to restore it to it formal glory. As part of this plan, they attacked Kiros where the Confederacy supplied them with the captured Togruta population, whom the Zygerrians hoped to sell by bring backing the royal slave auction.

But their plans were foiled by the Jedi who locate the missing colonists, and sent Anakin, Obi-Wan and Ahsoka go undercover to infiltrate the slavers and the auction on Zygerria where they were captured and enslaved. While Scintel develop feeling for Anakin and did not go ahead and kill him which Molec saw as a weakness and invited Dooku to Zygerria to speak with the Queen about her defiance in not killing Skywalker. When the Queen refused, Molec agreed with Dooku about killing the Jedi and that Scintel was unfit to be queen. Molec then stood by as Dooku force-choked her.

The Jedi arrived on the planet on the Zygerrian slave ship Tecora and tried to break into the slave processing facility as the Galactic Republic reinforcements where they battled the slavers where Wolfpack detachment attacked the facility with LAAT/i gunships and clone Z-95 starfighters, but were halted by its ray shields. However, Skywalker was able to destroy the defensive towers, while Kenobi and CT-7567 rebelled and killed Agruss who in a last act, tried to throw the Togruta into the volcanic crevice below the facility, but, following a plan devised by Tano, the Republic forces evacuated everyone onto Admiral Coburn's Arquitens-class light cruiser, the Republic strike team destroyed the slave facility.

Peace Conference
"The Republic recognizes the tragedy of war, but there is nothing we can change that has already occurred.''" "Say it aloud before this gathering&mdash;as representative for Chancellor Palpatine that you declare, without reservation, the Separatist state legitimate''."

- Senators Padmé Amidala and Voe Atell

At the height of the Clone Wars, the Confederacy of Independent Systems held a peace conference with the Galactic Republic on the neutral planet Mandalore between representatives of boty governments in an effort to end the pan-galactic conflict. The conference was presided over by Duchess Satine Kryze within her royal palace in the New Mandalorian capital Sundari. At the beginning of the meeting, Naboo Senator Padmé Amidala opened up the discussions, leading the Republic senators in the peace negotiations, but she was quickly rebuffed by Senator Voe Atell, who called for the Republic to declare the Separatist Alliance legitimate. However, before the delegates could further discuss their terms of peace, Lux Bonteri, son of the late Onderonian senator Mina Bonteri, interrupted the summit and announced to the politicians that it was Count Dooku that had his mother murdered. This led young Bonteri to soon afterward be escorted out by Separatist security droids, allowing the discussion to continue. Shortly after his escape, however, the negotiations fell apart completely.

Onderon Rebellion
"Our true king has been silenced. The one you recognize is a traitor and a Separatist minion."

- Saw Gerrera opinion of the Separatist backed King

Having instigated Onderon secession from the Galactic Republic at the war's outset, King Sanjay Rash found his regime, which was being backed by the Confederacy of Independent Systems, challenged by a group of rebels organized by the young insurgent Saw Gerrera. Who hoped to restore the deposed King Ramsis Dendup to the throne. Seeing an opportunity to engage the Confederacy on another front, the Republic bagan to fund the rebels with credits and arms to combat Rash's occupational forces from the Separatist Droid Army. While the Jedi High Council sent a team of advisors to train the rebels along with some of the 505st Legion who were covertly inserted onto Onderon and oversaw training sessions at the insurgency's jungle camp, though the training escalated into actual combat when a battle droid squad attempted to exterminate the rebels, the newly trained rebels eliminated the enemy droid squad and infiltrated the Separatist-occupied capital Iziz, conducting strikes on droid patrols throughout the city and bagan targeting Iziz's main power generator to extinguish the battle droids recharging source while also proving they were capable of challenging the Separatists and continued offensives against the battle droid forces. Count Dooku sent Rash reinforcements under the command of the super tactical droid General Kalani.

General Tandin and his royal guards sided with the rebels during Rash's attempted execution of ex-King Dendup, helping Steela and her insurgents rescue Dendup and pledging the Royal Onderon Militia to their forces. With Steela appointed by Dendup as their commanding general, the joint rebel and royal soldiers pulled out from Iziz, hoping to preserve civilian lives by isolating armed conflict to the eastern highlands. As full-scale fighting began, the rebels used the mountain terrain against the Separatists and despite heavy casualties, retaliated with a supply of rocket launchers illegally provided by the Republic via the pirate ship Hondo Ohnaka that could penetrate the droid gunships ray shielding allowing the rebelsto win over the Confederate forces, at some point after this final skirmish, Dooku contacted Rash and Kalani. Rash quickly explained what had happened and that they would need even more help to defeat the rebels. Dooku coldly refused, not wanting another war to deal with. He commanded Kalani to call back all of the droid forces from the planet. As Rash angrily protested, Kalani shot the deluded king, killing him. Okalin quickly raised his hands, not wanting to suffer the same fate.

Continuing engagements
"I've been monitoring your transmissions, General, and I know that this little chat is being sent to the Jedi Council. So let me make one thing perfectly clear. As long as the Republic resists me, 'innocents' will continue to die. Every death in this war lies firmly at the feet of the Jedi. And now&hellip; it is time for you and your passengers to join the ranks of the fallen."

- Dooku chilling words to Chubor before the mass genocide over Mahranee

The Carida Incident was the result of a mission undertaken by the Confederacy of Independent Systems who sabotaged the Venator-class Star Destroyer Renown by loading it with rhydonium canisters with the intention of ramming it into the Valor space station, the site of the Republic strategy conference. While escaping Abafar, the D-Squad took refuge in the Venator-class Star Destroyer, on which they planned to return the stolen Separatist encryption module, but they discovered it was overrun by droids. They undertook efforts to disrupt the Confederate plot and stop the ship from destroying a Republic strategy conference in the Carida system. Separatist and Republic warships would fight over Ringo Vinda for control the ring. The droid army deploying many Battle droids to defend their side of the ring. The Republic came close to taking the ring, attempting to finish off the droids stationed only a few feet away from the separatist control point. The battle ended with a forced retreat from the planet by Republic forces after one of their clone troopers, CT-5385 (nicknamed "Tup") who betrayed and intentionally killed Jedi General Tiplar in a trance-like state. Soon after with their momentum broken, Skywalker ordered a retreat, with Admiral Trench also reporting the odd nature of the victory to Count Dooku, and by extension, Darth Sidious.

Anaxes was attacked by a Confederate fleet under the command of Admiral Trench who besieged the Republic shipyards at Anaxes for weeks on end, exploiting the Techno Union's secret access to a Republic strategy algorithm. Which led to a lengthy campaign. Even as the tide of battle began to turn, Trench remained intent on annihilating the Jedi and their clone infantry. Though he activated a bomb beneath the assembly complex on Anaxes, Skywalker infiltrated Trench's flagship and forced the admiral to divulge the sequence to disarm the device. When Trench tried to retaliate, Skywalker drove his lightsaber through his chest.

The Confederacy would go on to commit a mass genocide under the orders from Dooku of refugees who were escaping from their homeworld of Mahran who were targeted because of its vast resources. The Mahahran people beg for help to the Jedi Order for aid. Jedi General Chubor brought a Galactic Republic task force of clone troopers but they were too late to prevent Confederate forces from laying total waste to the planet capital city. The Separatists did not wish to leave any survivors or witnesses, so Count Dooku outright blamed the Jedi Order for the massacre. It would forced the Jedi Council to lead an operation finally to assassinate Dooku, while refugees alongside the Jedi and clone soldiers fell silent in one of the most deadly actions in the Clone Wars.

Defeating the Shadow Collective
"Maul! Your end is at hand!"

- General Grievous, as the attack began

Darth Sidious brought Maul to the Spire, a prison fortress controlled by the Confederacy of Independent Systems on Stygeon Prime. It was there that Sidious briefly interrogated Maul, and told Count Dooku to find out information about who and where the Shadow Collective leaders were. The goal was to make Maul believe that the Sith wanted to destroy the Shadow Collective, so he would seek out Mother Talzin. Meanwhile, Sidious was followed to Stygeon Prime by two Death Watch warriors, Rook Kast and Gar Saxon, under orders from Mandalore's Prime Minister, Almec to free Maul from the Spire.

After being freed, Maul was tracked to Zanbar by General Grievous along with a Separatist fleet. Dooku ordered Grievous not to kill Maul, simply to defeat and break his forces enough that Maul would seek out Mother Talzin's help. Grievous launched his forces towards the surface, and Maul's troops immediately began firing anti-aircraft weaponry at them. The heavy fire was not enough to repel the ships, however, so the Separatists pressed their attack and deployed all of their forces.

After the Shadow Collective lost on Zanbar, Maul attacked Dooku and Grievous over Ord Mantell which led to Maul make his way into orbit and boarded Grievous' command ship. Grievous disabled the battle droid army after Maul gave him the choice to do so or die, and the cyborg general was taken into custody. Dooku, meanwhile, had engaged and defeated the Nightbrothers in battle, before being captured by the Shadow Collective forces.

Sidious and Grievous arrived to confront Maul and Talzin on Dathomir after finding out where Dooku was being held, the latter of whom had used her magick to take control of Dooku's body. This led to a lightsaber duel, in which Sidious quickly gained the upper hand against the Dooku-controlled Talzin. Talzin appeared in the flesh, returned to her physical form, and held off a Force lightning assault from Sidious and, eventually, Dooku. Talzin sacrificed her own life to allow Maul to escape, as Grievous fatally stabbed the Dathomir witch through the chest while Maul fled from Dathomir. The Separatists, meanwhile, also attacked Maul's Black Sun and Pyke Syndicate allies, leading the mercenaries to end their alliance with Maul; destroying the Shadow Collective.

Attempts on Dooku
Towards the end of the Clone Wars, the Jedi Council decided to assassinate Count Dooku to hasten the end of the war. They sent Quinlan Vos under the guise of a bounty hunter to recruit Ventress, who previously came close to killing Dooku and knew much about him, to aid him in the assassination. Their first attempt on Dooku ended in failure with Vos being captured, with a final plan to assassinate him during the second battle of Christophsis ending in the death of his formal apprentice Asajj Ventress.

Final actions
"The end of the war is near General"

- Darth Sidious to General Grievous



The Republic had began towards the end of the war laying sieges to many of the Separatist strongholds before the Battle of Coruscant occurred in the Outer Rim Territories with battles on Cato Neimoidia, Mygeeto, Saleucami, Felucia, ans well as Kaller in what was some of the most deadly fighting within the whole conflict as the Separatists tried to maintain their hold on theses key worlds. Count Dooku who had got away from the Jedi on Christophsis, sometime later launched an attack in the Core Worlds on the capital of the Galactic Republic on Coruscant with both the Republic fleets and Confederate fleets fighting over the planet, where Supreme Chancellor Sheev Palpatine was kidnapped by General Grievous, however two Jedi Knights, Obi-Wan Kenobi and Anakin Skywalker were sent to rescue him on board the Invisible Hand before the fleet could get away. Once onboard and reaching the higher deck, Tyranus laid in wait and dueled the two Jedi Knights, with Skywalker managing to struck down Darth Tyranus during the process at the request of Darth Sidious. After trying to escape, the Chancellor, Jedi, and R2-D2 were captured by Grievous, leading to a second duel. However, during the duel Grievous got away and escaped with the Separatist fleet withdrawing, leading the deadly war to carrying on.

Grievous became the de-facto leader of the Confederacy and fled to Utapau, an occupied world after the loss of Count Dooku where he hid and met with the Separatist Council and oversaw the Separatists till Clone Intelligence found his location, which led the Jedi Order to send Jedi Master Obi-Wan Kenobi to investigate to confirm if there was a Separatist presence, while the Dark Lord of the Sith Darth Sidious ordered that Grievous to send the Separatist Council to the Mustafar system, supposedly to keep them safe from the Republic who was informing the Council of the arrangements as Kenobi overheard secretly.

Meanwhile, hoping to take a system of high importance, the Separatists mounted an attack on Kashyyyk due to its status as a major navigational point which was of prime strategic benefit to the Republic.

Back on Utapau, Obi-Wan confronted Grievous after discovering his presence and shortly after a duel started between the two began, Clones troopers began the fight for Utapau in which was one of the last battles to begin in the war, it would lead to the fall of Grievous and warrant a final blow to the Separatist Alliance but continued to engage the Republic for a period afterwards. Upon Grievous's death, it shortly reported to the Jedi Council, with Mace Windu preparing to go to the Supreme Chancellor of the Republic office to inform him of this development in the hopes that he lay down his emergency powers, until Anakin revealed Palpatine is in fact the Sith Lord they had been looking for, leading to a purge and deaths of nearly all Jedi including those on the various ongoing engagements with Separatists forces.

Fall of the Confedaracy
"The Separatists have been taken care of, my master.''" "''It is finished, then. You have restored peace and justice to the galaxy."

- Darth Vader and Darth Sidious

Massacre on Mustafar
"The plan has gone as you had promised, my Lord.''" "''You have done well, Viceroy. When my new apprentice, Darth Vader, arrives, he will take care of you."

- Nute Gunray and Darth Sidious

The Confederacy had been defeated by the Republic just as Darth Sidious had intended; with it final losses on Kashyyyk and the Outer Rim Territories during the Sieges and the death of General Grievous, ended the fighting shortly after. With the Separatists still in control of their assets and remaining worlds, the Chancellor of the Republic sent his new enforcer to deal with the last threat to his vision.

In the final act of the Sith grand plan; the Separatist leadership was brutally murdered by the Sith Lord Darth Vader in their bunker within the mineing complex on Mustafar, with Nute Gunray the last to fall, officially ending the Separatist cause and with Vader receiving the order to end the Clone Wars by sending a shutdown signal to the entire droid army and navy, without them to protect the remaining systems. They were forced to surrender to the Empire and live under occupation, which was all a pretext to amassing complete central authority over the Republic and riding any major threats, so it could be transformed into the Galactic Empire.

Subjugation of Separatist worlds
"As Governor Tarkin can attest, our navy was still chasing Separatist holdouts as late as a year ago."

- Rancit, to Tarkin

Following the fall of the Confederate leadership on Mustafar and the destruction of the complex during a duel between Darth Vader and Obi-Wan Kenobi after, the fledgling Empire rooted out remaining Separatist holdouts for at least four years after the Clone Wars, while criminal organizations composed of re-purposed battle droids such as the Droid Gotra operated in Coruscant's underground while some escarped notice all together.

Seeking to make examples of worlds who continued to harbor secessionist tendencies, worlds like Kooriva, Murkhana and Raxus, which still hosted ex-Separatists, became a target of the Empire, with one year after the end of the Clone Wars then Moff Wilhuff Tarkin was assigned to make an example of Antar 4, a populous moon that had been a part of the Confederacy of Independent Systems. Wanting to make examples of worlds who continued to harbor secessionist tendencies, Imperial forces however made no attempt to sort the Separatists from Imperial loyalists when they carried out mass arrests, executions, and massacres. This served to compel Raxus and other worlds to surrender all former Separatists to Imperial custody, or else suffer a similar demise to that of Antar 4.

The Empire would later see to the near-extermination of all life on Geonosis, a once major Separatist world, by wiping out most of the entire population of Geonosians using bombs and other foreign weapons.

Legacy
"Understand as a Separatist, I fought for freedom but put my trust in a corrupt leadership." "You were the leadership—a General." "The Jedi were Generals. Do you truly believe they comprehended the cause they started? Holster your weapon, boy. We are no longer enemies. Perhaps we never were."

- Former Separatist General Kleeve to Jedi survivor Caleb Dume

In the time of the Galactic Empire, it used the memory of the war to maintain order, telling the galaxy that it was the rebellious Separatists that caused the destructive Clone Wars. The term "Separatist" was used to refer generally to those still involved in forming rebellion. Separatist military equipment and technology that survived the Clone Wars continued to be in use by varying resistances and pirates that managed to obtain them for their own purpose, with some being reused and modified extensively by the Alliance to Restore the Republic, such as the IG-227 Hailfire-class droid tank and Armored Assault Tank during the Galactic Civil War.

Soon after the Empire's formation, Emperor Palpatine and Darth Vader observed the construction of the Death Star, which had begun construction sometime during the Clone Wars by the Confederacy, having partially completed a framework by the time the war came to an end. With the Separatists defeated and their leaders killed, the Ultimate Weapon project was appropriated by the nascent Galactic Empire, who planned to use it to control the galaxy. Nineteen years later, the Death Star was used to destroy the planet Alderaan, killing millions of people living there, and later was destroyed in the Battle of Yavin by a young Rebel pilot and the son of Darth Vader, Luke Skywalker.

Government
"The Separatists used to be a part of the Republic. I was close with many of the senators who left. I may not agree with them, but they're more than pawns."

- Republican Senator Padmé Amidala on the Separatist Senate



The Confederacy had a single Head of State who headed over the Separatist Council which was Count Dooku, who was in fact a Sith Lord called Darth Tyranus, who seved under Darth Sidious who was overseeing the Separatists in utter secret. After his death during the Clone Wars with the Galactic Republic over Coruscant. General Grievous, who was the Supreme Commander of the Droid Armies assumed command of the Separatists briefly till his death on Utapau. After this Nute Gunray took over as Head of State, being the head of Council but this like Grievous was short lived as he himself would be killed alongside the whole Separatist Council by Darth Vader.

Operating alongside but below the council was the Separatist Senate who dealt with diplomatic and civilian issues. It was made up of worlds who had joined the Separatist cause, including ones that had once been members of the Galactic Republic and was based on the planet Raxus.

List of Leaders

 * 1) Count Dooku
 * 2) General Grievous (briefly)
 * 3) Nute Gunray (briefly)

Military
"Our friends from the Trade Federation have pledged their support. And when their battle droids are combined with yours, we shall have an army greater than any in the galaxy. The Jedi will be overwhelmed. The Republic will agree to any demands we make."

- Count Dooku

The various commercial entities who joined under the banner of the Confederacy pledged their forces to the Separatist Army and Navy, creating one sprawling group of droids as well as organic forces, and local warriors, and was often referred to as the Droid Army. These ranged from the Trade Federation's battle droids to the security forces maintained by the Commerce Guild, InterGalactic Banking Clan and Corporate Alliance.

One of the largest contributions was by the Techno Union, which donated not only its new B2 super battle droids, but numerous foundries capable of producing thousands more droids for the Confederacy.

It also deployed much larger weapons of war during the Clone Wars. Commerce Guild OG-9 homing spider droids were a common sight on many frontlines, and tank droids, droid subfighters, and AATs provided heavy firepower.

Astrography
The territory of the Confederacy of Independent Systems varied in size a great deal during the course of its short history numbered at least ten thousand star systems, as well as the various commercial groups with the planets they controlled. Theses systems mostly fell to the Galactic Republic during the Clone Wars. With the remaining fell under the rule to the Galactic Empire shortly after the war ended.